PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.4G252900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family ARF
Protein Properties Length: 1153aa    MW: 127418 Da    PI: 6.5787
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.4G252900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.79.1e-23143244199
                         EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                         f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++  +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F  
  Sevir.4G252900.1.p 143 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIQARDLHDATWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFV- 230
                         99*****************************954.4444.48************************************************. PP

                         -SSSEE..EEEEE-S CS
                  B3  85 dgrsefelvvkvfrk 99 
                          ++++++l+++++r+
  Sevir.4G252900.1.p 231 -RDEKQQLLLGIRRA 244
                         .5688889****997 PP

2Auxin_resp118.36.4e-39269352183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaa+++s+F+++YnPras++eFvv+++k++kal+ +++s+GmRf+m+fete+  +rr++Gt++g+sdldpvrW+nS+Wr+L+
  Sevir.4G252900.1.p 269 AAHAAANNSPFTIFYNPRASPTEFVVPFAKYQKALYgNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 352
                         79**********************************9*********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575127No hitNo description
SuperFamilySSF1019362.62E-43132272IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-41135258IPR015300DNA-binding pseudobarrel domain
CDDcd100175.82E-19142234No hitNo description
PfamPF023621.1E-20143244IPR003340B3 DNA binding domain
SMARTSM010197.4E-23143245IPR003340B3 DNA binding domain
PROSITE profilePS5086311.97143245IPR003340B3 DNA binding domain
PfamPF065071.1E-33269352IPR010525Auxin response factor
PfamPF023095.0E-1010171104IPR033389AUX/IAA domain
PROSITE profilePS5174528.93910191103IPR000270PB1 domain
SuperFamilySSF542771.37E-710311098No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1153 aa     Download sequence    Send to blast
MIKQQQQPAS SVGPQAAAVA AAAASGCEGE KKPPAINSEL WHACAGPLVS LPPAGSLVVY  60
FPQGHSEQVA ASMQKDVDGH VPSYPNLPSK LICLLHNVTL HADPETDEVY AQMTLQPVTS  120
YGKEALQLSE LALKQPRPQT EFFCKTLTAS DTSTHGGFSV PRRAAEKIFP PLDFSMQPPA  180
QEIQARDLHD ATWTFRHIYR GQPKRHLLTT GWSLFVSGKR LFAGDSVIFV RDEKQQLLLG  240
IRRANRQPTN ISSSVLSSDS MHIGILAAAA HAAANNSPFT IFYNPRASPT EFVVPFAKYQ  300
KALYGNQISL GMRFRMMFET EELGTRRYMG TITGISDLDP VRWKNSQWRN LQVGWDESAA  360
GERRNRVSIW EIEPVAAPFF ICPPPFFGSK RPRQLDDESS EMENLLKRAM PWLGEEICIK  420
DPQTQNTIMP GLSLVQWMNM NMQQNSSFAN TAMQSEYLRS LSNPNMQNLG AADLSRQLCL  480
QNQILQQNSI QFSSSKLPQQ MQPVNELSKA TLPLNQLGMG TKLQEQTHDP SNLQRQQQSM  540
NQLLPLSQSQ TNLVQAQVLV QNQMQQQQQP PSMTQNQQPA ASQPQLLPHP QQQQQQQQHQ  600
QQKLLHQQQQ LLLQQQQLQQ QQQNQQQLNK MAAQVPNLAA QQLQLSDQQL QLQLLQKLQQ  660
QQQSLLSQPA VTLAQLPLIQ EQQKLILDMQ QQLSNSQSLS QQQTMPQQST KVPSQATPPP  720
PPSMQQEPQQ KVPQKHVGFT DTSHAAIPPT TSVNAISAAG SPMMANGAAH SVLTEEIPSC  780
STSPSTANGN HLVQPILGRN QQCGMINNEK LPQSTAPMSI PSSLEAVTGI PRSTKELPKL  840
NSNVKQSVMA SKLPNTGPIP QNLVNSAPPT DYLETASSAT SVWLSQADGL LHQGFPMSNF  900
NQQQIFKDAP PETDIQGTDP SNNALFGINN DGQLGFPMGA DGFLSNGIDA SKYQNHISTD  960
IDGNYRIPKD GQQEISSSMV SQSFGASDMA FNSIDSGMND GGFLNRTSWP PAAPLKRMRT  1020
FTKVYKRGAV GRSIDISHYS GYDELKHALA RMFSIEGQLE EQQRIGWKLV YKDHEDDILL  1080
LGDDPWEEFV NCVRCIRILS PQEVQQMSLD GDLGNNILPN QACSSSDGGN AWRARCDQNS  1140
GNPSTGSYDQ FE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1682937345388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1033120.0AK103312.1 Oryza sativa Japonica Group cDNA clone:J033125G19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004966097.10.0PREDICTED: auxin response factor 19-like
SwissprotQ0D9R70.0ARFS_ORYSJ; Auxin response factor 19
TrEMBLC5Z9810.0C5Z981_SORBI; Auxin response factor
STRINGSb10g029130.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19